Mouse Ancestry Mapper
The ancestral origins of 12 classical inbred strains were mapped to four wild derived strains - WSB/EiJ, PWD/PhJ, CAST/EiJ, and MOLF/EiJ - each representing domesticus, musculus, castaneus, and molossinus strains using Hidden Markov Models (HMM). Please contact Hyun Min Kang (hmkang at cs dot ucla dot edu) for the questions.
|Select the color of strains you want to visualize for each ancestral strains|
Mouse Haplotype Block Viewer
Haplotype blocks of 16 inbred mouse strains (including wild-derived strains) were predicted by mering the results from pairwise Hidden Markov Models (HMM) with stringent threshold of being IBD regions. The IBD regions will be greedily visualized with respect to the priorities of strains. Click here to see the summary of the block paritions
|Select the strains you want to visualize in the order of priority|