Efficient control of population structure in model organism association mapping (Efficient Mixed Model Association)

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Documentation for package ‘emma’ version 1.1.2

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emma.kinship IBS Kinship matrix generation
emma.ML.LRT Linear mixed model association via Likelihood Ratio test with ML estimates.
emma.MLE Maximum likelihood estimation using linear mixed model
emma.MLE.noX Maximum likelihood estimation using linear mixed model without fixed effects
emma.REML.t Linear mixed model association via t-test with REML estimates.
emma.REMLE Restricted maximum likelihood estimation using linear mixed model